HsaEX0016265 @ hg19
Exon Skipping
Gene
ENSG00000204248 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:2187]
Coordinates
chr6:33134847-33135310:-
Coord C1 exon
chr6:33135203-33135310
Coord A exon
chr6:33135041-33135094
Coord C2 exon
chr6:33134847-33134900
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCCTCAAATCTTCAGGGT
3' ss Score
6.74
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGAGATCCTGGCGCTATAGGTGCCCCGGGGAAGACAGGCCCGGTGGGTCCTGCAGGCCCAGCAGGGAAACCTGGCCCTGATGGTCTGAGGGGGCTCCCAGGCTCAGTG
Seq A exon
GGTCAGCAAGGCCGACCTGGAGCTACAGGCCAGGCTGGGCCCCCAGGTCCTGTG
Seq C2 exon
GGACCCCCAGGGCTGCCTGGTCTCCGGGGCGATGCTGGAGCCAAGGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248_MULTIEX1-32/37=31-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(41.4=80.6)
A:
PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=PU(10.4=44.4)
C2:
PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATAGGTGCCCCGGGGAAG
R:
CTCTCCCTTGGCTCCAGCATC
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)