RnoEX6061489 @ rn6
Exon Skipping
Gene
ENSRNOG00000000463 | Col11a2
Description
collagen type XI alpha 2 chain [Source:RGD Symbol;Acc:2373]
Coordinates
chr20:3854656-3855094:+
Coord C1 exon
chr20:3854656-3854763
Coord A exon
chr20:3854867-3854920
Coord C2 exon
chr20:3855041-3855094
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTTCTAACCTATAGGGT
3' ss Score
9.94
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGGGACCCTGGTGCTGTGGGGGCCCCAGGAAAGACGGGCCCTGTGGGCCCTGCAGGCCCAGCAGGGAAGCCTGGCCCCGATGGTCTTCGAGGGCTCCCTGGCTCAGTG
Seq A exon
GGTCAGCAAGGCCGCCCTGGAGCCACAGGCCAGGCTGGGCCCCCAGGTCCTGTG
Seq C2 exon
GGACCCCCAGGGCTTCCTGGCCTCCGGGGTGATGCTGGCGCCAAGGGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000463-'67-59,'67-58,68-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(17.0=41.7),PF0139113=Collagen=FE(46.7=100)
A:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(7.0=27.8)
C2:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=FE(23.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGACGGGCCCTGTG
R:
CTTCTCCCCCTTGGCGCC
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]