DreEX0022875 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7267807-7268368:-
Coord C1 exon
chr19:7268261-7268368
Coord A exon
chr19:7268123-7268176
Coord C2 exon
chr19:7267807-7267968
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATCTGATAACTTCATTCAGGGT
3' ss Score
4.53
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGTGATTCAGGTGCTCTTGGTCCTCCCGGAAAAACTGGCCCTGTGGGGCCACAGGGACAACCCGGAAAACCAGGAACTGAGGGTCTAAGAGGGTTGCCTGGAACAGTG
Seq A exon
GGTGAGCAAGGTTCTCCAGGTGCTGCAGGCCCTAAAGGACCTCCTGGACCTCTG
Seq C2 exon
GGTCCTCCAGGTCTGGCTGGTCTTCGCGGTGATCCCGGTGCTAAAGGTGAGAAGGGACATCCAGGTATGCTCGGACTGATCGGGCCTGCTGGAGAACAAGGAGAGAAGGGAGACAGAGGCATGCCAGGACCACAGGGATCAACAGGACCCAAGGGAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(52.2=100),PF0139113=Collagen=PU(34.3=63.9)
A:
PF0139113=Collagen=FE(27.0=100),PF0139113=Collagen=PU(11.1=44.4)
C2:
PF0139113=Collagen=PD(9.0=11.1),PF0139113=Collagen=PD(35.8=44.4),PF0139113=Collagen=PU(75.7=98.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCGGAAAACCAGGAAC
R:
CCGATCAGTCCGAGCATACCT
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]