BtaEX6096934 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001634 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:HGNC:8919]
Coordinates
chr23:7532610-7533326:+
Coord C1 exon
chr23:7532610-7532799
Coord A exon
chr23:7532882-7532976
Coord C2 exon
chr23:7533246-7533326
Length
95 bp
Sequences
Splice sites
3' ss Seq
CAGTCCTTTGTTCCTTCTAGGCC
3' ss Score
8.75
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTTCCCTTCAGGGCAGGGCCCTGGGGGAGGGGTCTCACGTCCCCTGGGGAAGCGCCGGAGGCCGGAGCCAGAGCCCCTGAGGAGGAGGCAGAAGGGGAAAATGGAGGAGCTGGGGCCACCCTCAGCAGTGCGCAACCAGCCCGAGCCCCAGGAGCAGAGGGAGCGGGCTCGTCTGCAAAGGGCACTGCAG
Seq A exon
GCCTCAGTGTCTCCACCACCCTCCAGCCCTAACCAGAGTTACCAGGGCAGCAGCGGCTACAACTTCCGGCCCACAGATGCCCGCTGCCTGCCCAG
Seq C2 exon
CAGTCCCATCCGGATGTTCGCTTCCTTCCACCCCTCTGCCAGCACCGCAGGGACCTCTGGGGATGGTGAACCCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001634-'15-23,'15-20,16-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAGGGGAAAATGGAGG
R:
TTCACCATCCCCAGAGGTCC
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]