DreEX6042698 @ danRer10
Exon Skipping
Gene
ENSDARG00000057439 | phf1
Description
PHD finger protein 1 [Source:ZFIN;Acc:ZDB-GENE-100922-277]
Coordinates
chr16:45475151-45476246:+
Coord C1 exon
chr16:45475151-45475223
Coord A exon
chr16:45475723-45475835
Coord C2 exon
chr16:45476163-45476246
Length
113 bp
Sequences
Splice sites
3' ss Seq
ACAGCTGATCTTGTGTTTAGTCT
3' ss Score
4.73
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
CAAGATGCAGAAAAATCAAGAAGTGTTTACTCCTGCAAGTAGTCATAAAATGCATAGTTTACATAACATTAAA
Seq A exon
TCTTGTCCAGCAGGAGTTGCGGCAGACGCTCTTGACCGCGTGCCGTGCTGTCGTGGTTATGAAGGATCAAACCTGTACAACTCCAGAAAACCAGATGAGGAGATGAGTCTGGG
Seq C2 exon
TTCACCGCCGAAGAGGATGTTTGCTCTCTATCATCCATCATACAACGCATCTCAGGACCTGTCTAGAGCTCTTCACCACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057439-'14-18,'14-17,15-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.289 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGCAGAAAAATCAAGAAGTGT
R:
TAGTGGTGAAGAGCTCTAGACAGG
Band lengths:
154-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]