GgaEX7009848 @ galGal4
Exon Skipping
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8289080-8289536:-
Coord C1 exon
chr17:8289449-8289536
Coord A exon
chr17:8289252-8289337
Coord C2 exon
chr17:8289080-8289175
Length
86 bp
Sequences
Splice sites
3' ss Seq
CGCTGGTTGTTGCGGTGCAGAGC
3' ss Score
5.02
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCTGCTCCCGGGGCAGCTCCAGCAGCAGAAGCGGCGTGCGGTGCGGTGGAAGAGGGCCAAGTTCCTGCTGGAGGACGCCATCCCCAGC
Seq A exon
AGCGACTTCACCTCGGCCTGGAGCACCAACCACCACCTGGCCAGCATCTTCGACTTCACACTGGATGAGATTCAGAGCCTGAAGAG
Seq C2 exon
CGCCAGCTCGGGGCAGACCTTCCTCTCCGACGTGGACTCCACGGATGCCGTCAGCACCTCAGGCTCAGCCACCACCAGCCTGTCCTGCGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595-'16-15,'16-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.788
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGTGCGGTGGAAGAG
R:
GGACTCGCAGGACAGGCT
Band lengths:
146-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]