DreEX6048584 @ danRer10
Exon Skipping
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12322547-12335651:-
Coord C1 exon
chr8:12335582-12335651
Coord A exon
chr8:12326774-12326859
Coord C2 exon
chr8:12322547-12322642
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGATGTCATTGTAGAAT
3' ss Score
6.2
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TAACTCTGATCCTGCAGAGAAGCGGAGGAAGAAGAGGGCCAAGTGGCTGCTGGAAGATGCTATTCCTAAC
Seq A exon
AATGACCTCACCTCCAGCTGGAGCACCAACCATCATATGGCCAACATCTTCGACTTCACGCTGGACGAGCTTCAGAGCTTGAAGAG
Seq C2 exon
TACCAGCTCAGGACAGACATTCAGTTTGGACCAGGACTCGACTGATGCGGCCAGCACTTCTGGTTCTGCCACTACCAGCGTCTCCTATGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.138 C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCTGCAGAGAAGCGGAG
R:
TGAAGTCATAGGAGACGCTGGT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]