HsaEX6062793 @ hg38
Exon Skipping
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120860090-120862005:-
Coord C1 exon
chr9:120861918-120862005
Coord A exon
chr9:120861089-120861174
Coord C2 exon
chr9:120860090-120860185
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTCCTGTGTCCACAGAGT
3' ss Score
11.82
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
TTTGTTGCCTCACGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
Seq A exon
AGTGACTTCACCTCAGCCTGGAGCACCAACCACCACCTGGCTAGCATATTTGACTTCACGCTGGATGAAATTCAAAGTTTAAAAAG
Seq C2 exon
TGCCAGCTCAGGCCAGACCTTCTTCTCAGATGTCGACTCCACCGACGCTGCCAGCACCTCTGGCTCTGCCTCCACCAGCCTCTCCTATGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403-'41-38,'41-35,43-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTCACGAATTCCAGCAG
R:
AGTCATAGGAGAGGCTGGTGG
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains