HsaEX6062793 @ hg19
Exon Skipping
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:24566]
Coordinates
chr9:123622368-123624283:-
Coord C1 exon
chr9:123624196-123624283
Coord A exon
chr9:123623367-123623452
Coord C2 exon
chr9:123622368-123622463
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTCCTGTGTCCACAGAGT
3' ss Score
11.82
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
TTTGTTGCCTCACGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
Seq A exon
AGTGACTTCACCTCAGCCTGGAGCACCAACCACCACCTGGCTAGCATATTTGACTTCACGCTGGATGAAATTCAAAGTTTAAAAAG
Seq C2 exon
TGCCAGCTCAGGCCAGACCTTCTTCTCAGATGTCGACTCCACCGACGCTGCCAGCACCTCTGGCTCTGCCTCCACCAGCCTCTCCTATGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403-'27-27,'27-25,29-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTCACGAATTCCAGCAG
R:
AGTCATAGGAGAGGCTGGTGG
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)