BtaEX6036253 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112144949-112147021:-
Coord C1 exon
chr8:112146934-112147021
Coord A exon
chr8:112145964-112146049
Coord C2 exon
chr8:112144949-112145044
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCCGCCCCGTGTGTCCACAGAGC
3' ss Score
11.44
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TTTGTTGCCTCATGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGACGCTATCCCCAGT
Seq A exon
AGCGACTTCACCTCCGCTTGGAGCACCAATCACCACCTGGCCAGCATATTTGACTTCACACTGGACGAGATCCAGAGTTTAAAAAG
Seq C2 exon
CGCCAGCTCAGGCCAGACCTTCTTCTCGGACGTGGACTCCACCGATGCCGCCAGCACCTCTGGCTCTGCTTCCACCAGCCTCTCCTACGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958-'15-16,'15-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATGAATTCCAGCAGCA
R:
CTGGAGTCGTAGGAGAGGCTG
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]