RnoEX6016548 @ rn6
Exon Skipping
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13960617-13962488:-
Coord C1 exon
chr3:13962401-13962488
Coord A exon
chr3:13961570-13961655
Coord C2 exon
chr3:13960617-13960712
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTTGTGTCCACAGAGT
3' ss Score
11.58
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
TTTGTTGCCTCAGGAATCCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
Seq A exon
AGTGACTTCACCTCAGCCTGGAGCACGGACCACCACCTGGCCAGCATATTCGACTTTACACTGGATGAAATTCAGAGTTTAAAAAG
Seq C2 exon
TGGCAGCTCAGGCCAGACCTTCTTCTCAGACGTGGATTCTACCGATGCTGCTAGCACCTCAGGCTCTGCGTCCACCAGCCTCTCCCAGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874-'16-16,'16-15,17-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAATCCCAGCAGCAGAAA
R:
GAGTCCTGGGAGAGGCTGG
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]