BtaEX6097324 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12757336-12760177:+
Coord C1 exon
chr23:12757336-12757463
Coord A exon
chr23:12758221-12758392
Coord C2 exon
chr23:12760022-12760177
Length
172 bp
Sequences
Splice sites
3' ss Seq
ACTTTATTGTTTCTTAACAGGCT
3' ss Score
10.63
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GATTTGCTTAATGATGCTGACATGTGCCGGAAAAAGATGCAGGCAGCTTCCACCCTCATTGATGGACTGAGTGGAGAAAAAGTCCGATGGACTCAGCAAAGCAAAGAGTTCAGAGCTCAGATTAATAG
Seq A exon
GCTTGTAGGGGATATTCTGCTGTGCACTGGATTCCTGTCCTACCTTGGTCCTTTCAATCAGATATTTAGGAACTATTTGCTGAAAGAGCAATGGGAGATAGAGTTGAAAGCACGGAAGATTCCTTTCACTGAAAACCTGAATCTTATTTCAATGTTGGTAGATCCTCCAACA
Seq C2 exon
ATTGGTGAGTGGGGGCTGCAAGGCTTACCAGGAGATGACCTCTCAATTCAGAATGGCATCATTGTGACAAAGGCCACCAGATACCCACTCCTCATAGACCCACAAACTCAAGGCAAAACGTGGATTAAATCAAAGGAAAAAGAAAACGACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'86-85,'86-84,87-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.0=100)
A:
PF127772=MT=PD(10.0=60.3),PF127812=AAA_9=PU(2.6=10.3)
C2:
PF127812=AAA_9=FE(22.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGCTGACATGTGCCGG
R:
CCACGTTTTGCCTTGAGTTTGT
Band lengths:
242-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]