GgaEX1020235 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28766610-28767827:-
Coord C1 exon
chr3:28767685-28767827
Coord A exon
chr3:28767441-28767612
Coord C2 exon
chr3:28766610-28766765
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTTTTCCTAGACT
3' ss Score
9.38
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGAGAAATATAACGTTTTGGCACAATTCTGCTCTTCAGTTTTGTGATGAAGATGTCATCAGAACACAAATAAACCATTTATTGCTCTCAAAGACCACTAATTCTCTCCTTAAATAAGCATATGGAGCAGAAATCTTCTTACAA
Seq A exon
ACTTGTGGGAGATATACTGCTTTGCACAGGTTTCCTTTCATACTGCGGACCTTTTAATCAAAATTTCAGAAATCTTTTGCTTAAAGATTTATGGGAAGAAGAGATGAGAGCCCATAAAATCCCCTTTTCTGAAAGCTTGAACTTGATTTCTATGCTGGTAGATCCACCAACT
Seq C2 exon
ATTAGTGAGTGGAATCTTCAAGGACTGCCTGGAGATGACCTCTCAATTCAGAATGGTATAATTGTCACTAAGGCAACTAGATATCCCCTTTTGATAGATCCACAAACTCAAGGGAAAACATGGATTAAAAAGAAAGAACAGGATAATGAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'55-55,'55-54,56-55
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF127772=MT=PD(3.4=68.8)
A:
PF127772=MT=PD(10.0=60.3),PF127812=AAA_9=PU(2.6=10.3)
C2:
PF127812=AAA_9=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAATTCTGCTCTTCAGT
R:
CCATGTTTTCCCTTGAGTTTGTGG
Band lengths:
249-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]