GgaEX1020235 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30635559-30637769:-
Coord C1 exon
chr3:30637642-30637769
Coord A exon
chr3:30636390-30636561
Coord C2 exon
chr3:30635559-30635714
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTTTTCCTAGACT
3' ss Score
9.38
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GACTTAATGAATGATGCAGAAACATGCAGAAGAAAGATGCAAGCAGCCTCTACACTTATACAAGGACTGAGTGGAGAGAAATCTAGGTGGACTGAGAAAAGAAGAGAATTTAAATCTCAGATTAACAG
Seq A exon
ACTTGTGGGAGATATACTGCTTTGCACAGGTTTCCTTTCATACTGCGGACCTTTTAATCAAAATTTCAGAAATCTTTTGCTTAAAGATTTATGGGAAGAAGAGATGAGAGCCCATAAAATCCCCTTTTCTGAAAGCTTGAACTTGATTTCTATGCTGGTAGATCCACCAACT
Seq C2 exon
ATTAGTGAGTGGAATCTTCAAGGACTGCCTGGAGATGACCTCTCAATTCAGAATGGTATAATTGTCACTAAGGCAACTAGATATCCCCTTTTGATAGATCCACAAACTCAAGGGAAAACATGGATTAAAAAGAAAGAACAGGATAATGAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'76-78,'76-77,77-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.0=100)
A:
PF127772=MT=PD(10.0=60.3),PF127812=AAA_9=PU(2.6=10.3)
C2:
PF127812=AAA_9=FE(22.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGATGCAGAAACATGCAGA
R:
CCATGTTTTCCCTTGAGTTTGTGG
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]