MmuEX0015100 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30921008-30924245:+
Coord C1 exon
chr17:30921008-30921135
Coord A exon
chr17:30921952-30922123
Coord C2 exon
chr17:30924090-30924245
Length
172 bp
Sequences
Splice sites
3' ss Seq
CATTTTATTTTTCTTCACAGACT
3' ss Score
9.94
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACCTGCTCAATGATGCCGACATGTGCAGGAAGAAGATGCAGGCAGCCTCCACGCTCATTGATGGCCTGAGTGGGGAGAAAGTCCGGTGGACCCAGCAAAGTAAGGAGTTCAAGACGCAGATTAATAG
Seq A exon
ACTCGTAGGCGATGTTCTGCTCTGCACAGGCTTTCTCTCCTACCTCGGCCCCTTCAATCAGATATTTCGGAACTATTTGCTTAAAGACCAATGGGAGTTAGAGTTGAAAGCACGGAAAATTCCTTTCACTGAAAACCTGAATCTTATTGCAATGTTGGTGGACCCTCCAACA
Seq C2 exon
ATTGGCGAGTGGGGCCTGCAGGGACTCCCTGGAGATGACTTGTCAATTCAGAATGGCATCATTGTGACAAAGGCCACCAGATACCCTCTGCTCATTGATCCCCAGACTCAGGGAAAAACGTGGATCAAATCGAAGGAAAAAGAAAACGACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'76-73,'76-72,77-73
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.0=100)
A:
PF127772=MT=PD(10.0=60.3),PF127812=AAA_9=PU(2.6=10.3)
C2:
PF127812=AAA_9=FE(22.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCAATGATGCCGACAT
R:
CGTTTTTCCCTGAGTCTGGGG
Band lengths:
246-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: