MmuEX0015100 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30784063-30787300:+
Coord C1 exon
chr17:30784063-30784190
Coord A exon
chr17:30785007-30785178
Coord C2 exon
chr17:30787145-30787300
Length
172 bp
Sequences
Splice sites
3' ss Seq
CATTTTATTTTTCTTCACAGACT
3' ss Score
9.94
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACCTGCTCAATGATGCCGACATGTGCAGGAAGAAGATGCAGGCAGCCTCCACGCTCATTGATGGCCTGAGTGGGGAGAAAGTCCGGTGGACCCAGCAAAGTAAGGAGTTCAAGACGCAGATTAATAG
Seq A exon
ACTCGTAGGCGATGTTCTGCTCTGCACAGGCTTTCTCTCCTACCTCGGCCCCTTCAATCAGATATTTCGGAACTATTTGCTTAAAGACCAATGGGAGTTAGAGTTGAAAGCACGGAAAATTCCTTTCACTGAAAACCTGAATCTTATTGCAATGTTGGTGGACCCTCCAACA
Seq C2 exon
ATTGGCGAGTGGGGCCTGCAGGGACTCCCTGGAGATGACTTGTCAATTCAGAATGGCATCATTGTGACAAAGGCCACCAGATACCCTCTGCTCATTGATCCCCAGACTCAGGGAAAAACGTGGATCAAATCGAAGGAAAAAGAAAACGACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'109-126,'109-122,110-126
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.0=100)
A:
PF127772=MT=PD(10.0=60.3),PF127812=AAA_9=PU(2.6=10.3)
C2:
PF127812=AAA_9=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCAATGATGCCGACAT
R:
CGTTTTTCCCTGAGTCTGGGG
Band lengths:
246-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types