BtaEX6097348 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12696554-12702659:+
Coord C1 exon
chr23:12696554-12696688
Coord A exon
chr23:12698789-12698950
Coord C2 exon
chr23:12702413-12702659
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTTTGCCACCTTAGATT
3' ss Score
7.39
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTCATTATGACTTTGGGTTGAGAAATATTCTATCTGTATTGAGGACACTCGGATCTCAAAAAAGAGCCAGACCAGAAGATAGTGAATTAAGCACGGTCATGAGAGGACTGAGAGATATGAACCTTTCTAAATTG
Seq A exon
ATTGATGAAGATGAACCCCTGTTCCTCAGCTTAATCAATGACCTGTTTCCAGGATTACAACTAGATAGTAATAGTTACGTGGAACTGCAAGCTGCAGTCACCAACCAGGTTCAGCTGGAAGGTTTGATTAACCATCCACCCTGGAATCTCAAACTCGTGCAG
Seq C2 exon
TTGTATGAGACGTCTCTGGTCCGTCATGGTTTGATGACTCTTGGGCCCAGCGGGTCTGGGAAGACAATGGTCATAACAATCCTGATGAAGGCACTGACAGAGTGTGGAAGGCCTCACAGGGAAATGAGAATGAATCCCAAAGCTATTACGGCTCCTCAGATGTTTGGCCGACTGGACACAGCGACCAATGACTGGACAGACGGGATTTTTTCTACTCTGTGGAGAAAAACATTAAAAGCTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'59-60,'59-59,60-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACGGTCATGAGAGGACT
R:
ATCCCGTCTGTCCAGTCATTG
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]