GgaEX6029631 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30666816-30669730:-
Coord C1 exon
chr3:30669596-30669730
Coord A exon
chr3:30668821-30668982
Coord C2 exon
chr3:30666816-30667062
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACACTGAATAACTTTTTCAGATA
3' ss Score
6.33
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTCATTATGACTTTGGTCTGAGGAACATCCTTTCAGTACTTAGGACTCTTGGAACTCAAAAAAGGGCCAGACCAAATGATAGTGAATTAAGCATTGTTATGAGGGGACTAAGAGATATGAATCTTTCAAAGCTG
Seq A exon
ATAGATGAAGATGAGCCCTTGTTTCTCAGTCTTATCAATGATCTGTTTCCGGGGTTGCAGTTGGACAGTAATAAATACAATGAGCTTCAGGCTGCAGTAGCTAATCAGGTTGAAGAGGCAGGATTGACTAATCATCCACCATGGAATCTTAAGCTTGTTCAG
Seq C2 exon
TTGTATGAAACTTCTTTAGTACGTCATGGGCTGATGACACTTGGACCCAGTGGATCTGGAAAAACGATGGTCATAACTATATTAATGAAAGCACTGACAGAATGCGGACAACCTCATAGAGAAATGCGAATGAATCCCAAAGCTATTACAGCTCCTCAGATGTTTGGAAAACTAGATGCTGCAACTAATGATTGGACAGATGGAATATTTTCTACACTGTGGAGGAAAACATTGAAAGCTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'48-50,'48-49,49-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.072
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTTGGTCTGAGGAACATCC
R:
GAGGTTGTCCGCATTCTGTCA
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]