MmuEX6076577 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30742656-30747004:+
Coord C1 exon
chr17:30742656-30742790
Coord A exon
chr17:30744514-30744675
Coord C2 exon
chr17:30746758-30747004
Length
162 bp
Sequences
Splice sites
3' ss Seq
GCTCATGTCTGCCCTCCTAGGTT
3' ss Score
7.55
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCCACTATGACTTTGGACTGAGAAATATCCTGTCTGTGCTGAGGACCCTTGGGTCTCAGAAAAGAGCTCGGCCAGAAGACAGTGAGTTAAGCACGGTCATGAGAGGGCTACGAGACATGAACCTTTCTAAACTG
Seq A exon
GTTGACGAAGATGAGCCTCTGTTCCTCAGCTTGATCAACGACCTGTTTCCGGGGTTACAACTGGACAGCAGTACTTACGCGGAACTGCAATCCGCGGTGGACAACCAGGTTAACCTAGAAGGTCTGATAAACCACCCACCCTGGAACCTCAAATTAGTGCAG
Seq C2 exon
TTATATGAGACCTCTCTGGTACGGCATGGCCTGATGACCCTCGGGCCCAGCGGTTCTGGGAAGACGACGGTCATAACAATTCTGATGAAATCATTAACGGAGTGTGGGAGGCCTCACAGAGAGATGCGAATGAATCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCAGGCTGGATACAGCCACCAACGACTGGACAGATGGGATCTTTTCCACTCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'78-89,'78-86,79-89
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAGAAAAGAGCTCGGCC
R:
AACATCTGAGGCGCGGTAATC
Band lengths:
246-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types