RnoEX6062072 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9424749-9428561:+
Coord C1 exon
chr20:9424749-9424883
Coord A exon
chr20:9426713-9426874
Coord C2 exon
chr20:9428315-9428561
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTCCATGTCTGCCCTCCTAGGTT
3' ss Score
8.04
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCCACTATGACTTCGGACTGAGAAATATCCTGTCTGTATTGAGGACCCTTGGATCTCAGAAAAGAGCACGGCCAGAAGACAGTGAGCTAAGCACGGTCATGAGAGGACTACGAGACATGAACCTTTCCAAACTG
Seq A exon
GTTGATGAAGATGAGCCCTTGTTCCTCAGCTTGATCAACGACCTGTTTCCGGGTTTACAACTGGACAGCAATACTTATGCGGAACTGCAGGCCGCGGTGGACAACCAGGTTAACCTAGAAGGTCTGATTAACCACCCACCCTGGAATCTCAAATTAGTGCAG
Seq C2 exon
TTATATGAGACCTCTCTGGTACGGCACGGCCTGATGACCCTCGGGCCAAACAGTTCCGGGAAGACGACGGTCATAACAATTCTGATGAAGTCATTAACGGAGTGCGGGAGGCCCCACAGAGAGATGCGAATGAACCCAAAGGCGATTACCGCGCCTCAGATGTTCGGCCGGCTGGACACAGCCACCAACGACTGGACAGATGGGATCTTCTCCACCCTGTGGAGGAAGACATTAAAAGCTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'75-81,'75-78,76-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGAGCACGGCCAGAAG
R:
GAACATCTGAGGCGCGGTAAT
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]