GgaEX6029631 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28797121-28800035:-
Coord C1 exon
chr3:28799901-28800035
Coord A exon
chr3:28799126-28799287
Coord C2 exon
chr3:28797121-28797367
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACACTGAATAACTTTTTCAGATA
3' ss Score
6.33
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTCATTATGACTTTGGTCTGAGGAACATCCTTTCAGTACTTAGGACTCTTGGAACTCAAAAAAGGGCCAGACCAAATGATAGTGAATTAAGCATTGTTATGAGGGGACTAAGAGATATGAATCTTTCAAAGCTG
Seq A exon
ATAGATGAAGATGAGCCCTTGTTTCTCAGTCTTATCAATGATCTGTTTCCGGGGTTGCAGTTGGACAGTAATAAATACAATGAGCTTCAGGCTGCAGTAGCTAATCAGGTTGAAGAGGCAGGATTGACTAATCATCCACCATGGAATCTTAAGCTTGTTCAG
Seq C2 exon
TTGTATGAAACTTCTTTAGTACGTCATGGGCTGATGACACTTGGACCCAGTGGATCTGGAAAAACGATGGTCATAACTATATTAATGAAAGCACTGACAGAATGCGGACAACCTCATAGAGAAATGCGAATGAATCCCAAAGCTATTACAGCTCCTCAGATGTTTGGAAAACTAGATGCTGCAACTAATGATTGGACAGATGGAATATTTTCTACACTGTGGAGGAAAACATTGAAAGCTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.072
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(53.3=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTTGGTCTGAGGAACATCC
R:
GAGGTTGTCCGCATTCTGTCA
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]