BtaEX6097363 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12658330-12659954:+
Coord C1 exon
chr23:12658330-12658430
Coord A exon
chr23:12659422-12659559
Coord C2 exon
chr23:12659714-12659954
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTAATTATTTGGTTTCTCAGAAA
3' ss Score
6.87
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCAATTTTGATGATCTATGGAGGAAATTCGTTACATATTCATCTGGAGAACAACTTTTTGGGTTGCCTGTGACTGACTATGAGGTTTTACACAAAACTAG
Seq A exon
AAAGGAGCTCAACTTGCTGCAGAAGCTGTATGGACTGTACGATACTGTGATGGGCAATATTAGTGGCTATTATGAGATACTTTGGGGAGATGTAGATATTGAAAAAATTAATGCAGAACTTCTGGAGTTTCAAAACAG
Seq C2 exon
ATGTCGTAAACTGCCAAAAGGACTTAAAGATTGGCAAGCTTTTTTGGATCTGAAAAAAAGAATTGATGATTTCAGTGAGTCATGTCCTCTACTAGAAATGATGACCAATAAGGCAATGAAACAGAGGCACTGGGATCGGATCTCTGAGTTGACCGGAACCCCATTTGATGTGGAGTCAGATTCTTTTTGTCTCAGAAATATTATGGAAGCACCACTCCTTAAAAATAAGGATGATATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'44-45,'44-44,45-45=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(1.5=17.6)
A:
PF083938=DHC_N2=FE(11.1=100)
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATTTTGATGATCTATGGAGGA
R:
CCGGTCAACTCAGAGATCCGA
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]