GgaEX1020226 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28813494-28816829:-
Coord C1 exon
chr3:28816729-28816829
Coord A exon
chr3:28815174-28815311
Coord C2 exon
chr3:28813494-28813734
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTATTCTTCCAGAAA
3' ss Score
9.16
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GGTAATTTTGATGAGCTTTGGAGAAAGTTTATCACATACTCTTCTGGAGAACAGTTGTTTGGATTGCCTGTCACAGACTATGAAGTTTTGCATAAAGTCAG
Seq A exon
AAAGGAGTTAGCCTTTCTTCAGAAACTGTATGGATTGTATGATGCTGTAATAAACAGCATAAATGGCTATTACGAGATACTTTGGACAGATGTAGATATTGAAAAAATTAATGCTGAGCTTCTGGATTTTCAGAACAG
Seq C2 exon
GTGCCGTAGACTACCTAAAGGACTCCAAACCTGGCAAGCATTTTTAGATCTCAAGAAAAAAATTGATGATTTTAGTGAGTCTTGTCCTTTGTTGGAAATGATGACTGACAAAGCAATGAAGCCAAGGCATTGGAACCGTATAGCTGAAGTAACAGGACATCAATTTGATGTAGAGTCTGATTCATTTTGCCTTCGAAACATCATGGAAGCCCCCATTCTTCAAAATAAAGATGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(1.5=17.6)
A:
PF083938=DHC_N2=FE(11.1=100)
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGATTGCCTGTCACAGACT
R:
GGGGCTTCCATGATGTTTCGA
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]