HsaEX6047056 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38805718-38810679:+
Coord C1 exon
chr6:38805718-38805818
Coord A exon
chr6:38810144-38810281
Coord C2 exon
chr6:38810439-38810679
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTAGTTACTTTGTTTCCCAGAAA
3' ss Score
6.2
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCAGTTTCGATGATCTGTGGAGGAAATTTGTTACGTATTCATCTGGTGAACAACTTTTTGGATTGCCTGTGACTGATTATGAGGTTTTACACAAAACCAG
Seq A exon
AAAAGAACTCAACTTGCTGCAGAAGCTGTATGGATTGTATGACACCGTAATGAGCAGTATTAGTGGTTATTATGAAATACTTTGGGGAGATGTAGATATTGAAAAAATTAATGCAGAACTGCTGGAATTTCAAAACAG
Seq C2 exon
ATGTCGTAAACTTCCAAAAGGACTTAAAGATTGGCAAGCTTTTTTGGATCTCAAAAAGAGAATTGATGATTTCAGTGAGTCATGTCCTCTACTGGAAATGATGACCAATAAGGCCATGAAACAGAGACACTGGGATAGAATCTCCGAGTTAACTGGAACCCCATTTGATGTGGAATCTGATTCTTTTTGCCTTAGAAATATCATGGAAGCACCACTCCTTAAACATAAGGATGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'34-37,'34-36,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(1.5=17.6)
A:
PF083938=DHC_N2=FE(11.1=100)
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTTTCGATGATCTGTGGA
R:
ACTCGGAGATTCTATCCCAGTGT
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)