MmuEX6076591 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30852425-30856012:+
Coord C1 exon
chr17:30852425-30852525
Coord A exon
chr17:30854709-30854846
Coord C2 exon
chr17:30855772-30856012
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTCATCCTTTCGTTCCCCAGAAA
3' ss Score
9.78
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCAATTTCGACGATTTATGGAGGAAATTTGTCACATATTCATCCGGGGAGCAACTTTTTGGATTACCTGTGACTGACTACGAGGTTTTACACAAAACCAG
Seq A exon
AAAAGAGCTCAACTTGCTTCAGAAGCTGTATGGCTTGTACGACACTGTCATGGGCAGCATCAGTGGCTACTATGAGATCCTCTGGGGAGATGTAGACATCGAAAAGATCAATGCAGAGCTGCAGGAATTCCAGAACAG
Seq C2 exon
ATGTCGAAAACTCCCCAGGGCACTCAAAGATTGGCAGGCGTTTCTGGACCTCAAAAAAAGAATCGACGACTTTAGTGAGTCGTGTCCGCTGCTGGAGATGATGACCAATAAAGCGATGAAGCAGAGGCATTGGGACCGCATCTCAGAGCTCACCGGCACCCCGTTCGATGTGGAATCGGATACATTCTGTCTGAGAAATATCATGGAAGCGCCACTCCTTAAGAACAAGGATGATATCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'37-34,'37-33,38-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(1.5=17.6)
A:
PF083938=DHC_N2=FE(11.1=100)
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATATTCATCCGGGGAGCA
R:
GATTCCACATCGAACGGGGTG
Band lengths:
246-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: