HsaEX6047056 @ hg38
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein axonemal heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr6:38837942-38842903:+
Coord C1 exon
chr6:38837942-38838042
Coord A exon
chr6:38842368-38842505
Coord C2 exon
chr6:38842663-38842903
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTAGTTACTTTGTTTCCCAGAAA
3' ss Score
6.2
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCAGTTTCGATGATCTGTGGAGGAAATTTGTTACGTATTCATCTGGTGAACAACTTTTTGGATTGCCTGTGACTGATTATGAGGTTTTACACAAAACCAG
Seq A exon
AAAAGAACTCAACTTGCTGCAGAAGCTGTATGGATTGTATGACACCGTAATGAGCAGTATTAGTGGTTATTATGAAATACTTTGGGGAGATGTAGATATTGAAAAAATTAATGCAGAACTGCTGGAATTTCAAAACAG
Seq C2 exon
ATGTCGTAAACTTCCAAAAGGACTTAAAGATTGGCAAGCTTTTTTGGATCTCAAAAAGAGAATTGATGATTTCAGTGAGTCATGTCCTCTACTGGAAATGATGACCAATAAGGCCATGAAACAGAGACACTGGGATAGAATCTCCGAGTTAACTGGAACCCCATTTGATGTGGAATCTGATTCTTTTTGCCTTAGAAATATCATGGAAGCACCACTCCTTAAACATAAGGATGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'36-50,'36-41,42-50=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(1.5=17.6)
A:
PF083938=DHC_N2=FE(11.1=100)
C2:
PF083938=DHC_N2=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTTTCCCTGACTGCAAAAGC
R:
TGGAGTGATAACAAGACGATCAGT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains