HsaEX6047059 @ hg38
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein axonemal heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr6:38826156-38842505:+
Coord C1 exon
chr6:38826156-38826391
Coord A exon
chr6:38828184-38828288
Coord C2 exon
chr6:38842368-38842505
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTCCACCTTCATCCTGCAGGAA
3' ss Score
11.06
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGCCGATGAAATTGGCCTTATCCATCGAGGCCAAGGCATGGAAGATGTTACTCTGTCGATATCTGAATGAAGAATACAAAAAGAAAATGTCATACATGATAGCATTTATTAATGAATACTTGAAAAAGTTATCTAGACCTATTCGTGATTTAGATGATGTCAGATTTGCAATGGAAGCCTTGTCTTGCATACGTGATAATGAAATTCAAATGGACATGACTTTGGGACCAATTGAA
Seq A exon
GAAGCCTATGCTATTTTAAACAGATTTGAAGTTGAAGTAACCAAAGAAGAATCAGAAGCAGTTGATACCTTAAGATATTCTTTCAACAAATTGCAGAGCAAAGCT
Seq C2 exon
AAAAGAACTCAACTTGCTGCAGAAGCTGTATGGATTGTATGACACCGTAATGAGCAGTATTAGTGGTTATTATGAAATACTTTGGGGAGATGTAGATATTGAAAAAATTAATGCAGAACTGCTGGAATTTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'35-41,'35-36,37-41=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATCCATCGAGGCCAAGGC
R:
CTTCTGCAGCAAGTTGAGTTCT
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains