GgaEX6029616 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28818949-28822087:-
Coord C1 exon
chr3:28821852-28822087
Coord A exon
chr3:28820316-28820420
Coord C2 exon
chr3:28818949-28819062
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAAATTTTCATCTAGGAA
3' ss Score
9.41
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACCACTGAAAACAGCTTTATCAGCTGAAGCCAAAGCCTGGAAGTTACTCCTTTGTCGTTATTTAAATGAGGAATATAAAAAGAAAATGACAGACATGACATCATTCATAACCACATATTTAAAGAAATTGTCTCGACCTCTGAATGACCTAGATGATGTCAGGCTTGCAATGGAAGCTTTATCTGTCATACGTGATAATAAAATAGAAATGGATATGACTCTGGGACCTATTGAA
Seq A exon
GAAGCCTATGCCATTTTAAACACATTTGAAATTGAGGTTACAAAAGAGGAATCAGAAGGAGTTGATACACTCAGATATTCTTTTAATAAATTACAAGCTAAAGCT
Seq C2 exon
ATCAGTATTCAAGATGAGCTGACTCGAGTTCAGCCCAAATTTAAAAGCAATTTACTGGAATCAGTTGCAATTTTTCGGGAGGATGTGTCAAACTTTGAAACATCATATGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'9-10,'9-9,10-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTGAAGCCAAAGCCTG
R:
TTTGGGCTGAACTCGAGTCAG
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]