BtaEX6097367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12647837-12656334:+
Coord C1 exon
chr23:12647837-12648072
Coord A exon
chr23:12650158-12650262
Coord C2 exon
chr23:12656221-12656334
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAATCTGCCCCACTGCACAGGAA
3' ss Score
6.18
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AGCCAATGAAATTGGCCTTATCAATTGAGGCTAAGGCATGGAAGATGCTACTCTGTCGATATTTGAATGAAGAATACAAAAAGAAGATGTCAGACATGATAGCATTTATCAACGAATACTTGAAAAAGTTATCTAGACCTATCCGTGACTTAGATGATGTCAGATTTGCCATGGAAGCCTTGTCTTGTATCCGTGACAATGAAATTCAAATGGACATGACTTTGGGACCAATTGAA
Seq A exon
GAAGCCTATGCTATTTTAAACCGATTTGAAGTTGAAGTCACCAAAGAAGAATCAGAAGCAGTAGACACCTTGCGATATTCTTTCAACAAATTGCAGAGTAAAGCG
Seq C2 exon
GTTTCTGTACAAGATGAACTAGTACAAGTGCAGCCAAAGTTTAAAAGTAATCTACTTGAGTCTGTGGAAGTTTTTCGTGAGGATGTGATGAACTTTGCAGAAGCGTACGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTAAGGCATGGAAGATG
R:
TGGCTGCACTTGTACTAGTTCA
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]