GgaEX6029616 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30688647-30691785:-
Coord C1 exon
chr3:30691550-30691785
Coord A exon
chr3:30690014-30690118
Coord C2 exon
chr3:30688647-30688760
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAAATTTTCATCTAGGAA
3' ss Score
9.41
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACCACTGAAAACAGCTTTATCAGCTGAAGCCAAAGCCTGGAAGTTACTCCTTTGTCGTTATTTAAATGAGGAATATAAAAAGAAAATGACAGACATGACATCATTCATAACCACATATTTAAAGAAATTGTCTCGACCTCTGAATGACCTAGATGATGTCAGGCTTGCAATGGAAGCTTTATCTGTCATACGTGATAATAAAATAGAAATGGATATGACTCTGGGACCTATTGAA
Seq A exon
GAAGCCTATGCCATTTTAAACACATTTGAAATTGAGGTTACAAAAGAGGAATCAAAAGGAGTTGATACACTCAGATATTCTTTTAATAAATTACAAGCTAAAGCT
Seq C2 exon
ATCAGTATTCAAGATGAGCTGACTCGAGTTCAGCCCAAATTTAAAAGCAATTTACTGGAATCAGTTGCAATTTTTCGGGAGGATGTGTCAAACTTTGAAACATCATATGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'28-31,'28-30,29-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTGAAGCCAAAGCCTG
R:
TTTGGGCTGAACTCGAGTCAG
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]