RnoEX0028610 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9389495-9393427:+
Coord C1 exon
chr20:9389495-9389730
Coord A exon
chr20:9391815-9391919
Coord C2 exon
chr20:9393314-9393427
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCCGCCCCTTTGCAGGAG
3' ss Score
10.1
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGCCAATGAAGTTAGCCTTGTCCATCGAGGCCAAGGCGTGGAAGATGTTGCTCTGCCGCTACCTAAATGAGGAATATAAGAAGAAAATGTCAGACATGATAGTGTTTATCAACGAATACTTGAAAAAGTTATCCAGACCCATCCGGGACTTAGACGATGTCAGGTTCGCCATGGAGGCTTTGTCCTGTATCCGAGATAATGAAATTCAAATGGACATGACCTTGGGGCCCATAGAA
Seq A exon
GAGGCCTACGGCATTTTGAACAGATTCGAGGTGGAAGTGACCAAGGAGGAGTCAGAAGGCGTCGACACCCTGAGATACTCGTTCAACAAGTTGCAGAGCAAAGCG
Seq C2 exon
GTTTCCGTGCAAGATGAACTTGTGCAAGTGCAACCGAAATTCAAAAGCAGCCTGCTTGAGTCGGTGGATGTCTTCCGGGAGGACGTTATAAACTTCACAGAAGCCTATGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'54-58,'54-57,55-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGTTGCTCTGCCGCTAC
R:
GCAGGCTGCTTTTGAATTTCGG
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]