BtaEX6097865 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17814300-17815030:+
Coord C1 exon
chr23:17814300-17814374
Coord A exon
chr23:17814502-17814662
Coord C2 exon
chr23:17814861-17815030
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCGCACCCCCTACCACAGGAT
3' ss Score
5.82
5' ss Seq
TGGGTGGGC
5' ss Score
2.89
Exon sequences
Seq C1 exon
CGCCAAGGAGTGGGAGGAGGTGGCCCCAGATGTCCAGAGGCAGCTGCTGCACAGGAAGGAGGACGGGGAGTTCTG
Seq A exon
GATGTCCTACCAAGATTTCCTTGGCAACTTCACCCTCCTGGAAATCTGCAACGTGATACCCGACACGCTCTCCGGGGACTACAAGAGCTGTTGGCATACCACCTTCTACGAGGGCAGCTGGCGGAGGGGCAGCACCGCAGGGGGCTGCCGGAGCTACCTGG
Seq C2 exon
ACACATTCTGGACCAACCCCCAGTTTAAGATCTGTCTCCCCGAGAAGGATGACGACATAGAGGACGATGAAGCCGTCTGCACCTGCCTGGTGGCCCTGATGCAGAAGAACTGGAGGCGGACGAGGCCCCACGGAGCCCAGCTGGAGACCATTGGCTTCGTCATCTATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066-'11-12,'11-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
C2:
PF0106717=Calpain_III=FE(35.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGTGGGAGGAGGTGG
R:
CGAATAGATGACGAAGCCAATGG
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]