RnoEX0016673 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17741581-17742368:+
Coord C1 exon
chr9:17741581-17741655
Coord A exon
chr9:17741829-17741944
Coord C2 exon
chr9:17742193-17742368
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTGCTCCCGCCCCAGGAT
3' ss Score
8.97
5' ss Seq
AGGGCAGCT
5' ss Score
-5.83
Exon sequences
Seq C1 exon
AGCCAAGGAGTGGGAAGAGGTGATGCCGGAAGTTCAGATGCAGCTGCTGCACAAGAAGGAAGACGGGGAGTTCTG
Seq A exon
GATGTCCTATGAAGACTTCATGAGCAACTTTACATTGCTGGAGATTTGCAACCTCACCCCGGACGCGCTCTCCTCCTGGGATTACAAGAGCTGCTGGCACACAACCTTCTTTGAGG
Seq C2 exon
AGACGTTCTGGAGCAACCCCCAGTTTAGGATCTCTCTCCCAGAAACGGATGATCCAGAGGATAGCTCTGACAAAAGCGAAATGGTTTGCACGTGTCTGGTGGCGCTGATGCAGAAGAACTGGAGACATGCTCGAGAGGGACCCCAGCTGCTCACCATAGGCTTCGTCGTCTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-'8-12,'8-11,9-12
Average complexity
S*
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=33.9),PF0106717=Calpain_III=PU(15.2=42.9)
C2:
PF0106717=Calpain_III=FE(36.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGAGTGGGAAGAGGTGA
R:
AGACGACGAAGCCTATGGTGA
Band lengths:
244-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]