BtaEX6098206 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014420 | AGER
Description
Bos taurus advanced glycosylation end product-specific receptor (AGER), mRNA. [Source:RefSeq mRNA;Acc:NM_173982]
Coordinates
chr23:27011283-27011903:+
Coord C1 exon
chr23:27011283-27011309
Coord A exon
chr23:27011430-27011559
Coord C2 exon
chr23:27011682-27011903
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTATCCCCATCTCCATACAGGCT
3' ss Score
8.92
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAACAGGCGAGGAGGGGACGACTGCAG
Seq A exon
GCTCTGTGGAAGGGCCGGGGCTGGAAACCCTAGCCCTGACCCTGGGGATCCTGGGAGGCCTGGGGACAGTCGCCCTGCTCATTGGGGTCATCGTGTGGCATCGAAGGCGGCAACGCAAAGGACAGGAGAG
Seq C2 exon
GAAGGTCCCGGAAAACCAGGAGGAGGAAGAGGAGGAGAGAGCGGAACTGAACCAGCCAGAGGAGCCCGAGGCGGCAGAGAGCAGCACAGGAGGGCCTTGAGGAGCCCACGGCCAGACCCGATCCATCAGCCCCTTTTCTTTTCCCACACTCTGTTCTGGCCCCAGGCCAGTTCTCCTCTGTATAATCTCCAGCCCACGTCTCCCAAACTTTCTTCCACAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014420-'12-15,'12-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.357 C2=1.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=FE(16.3=100)
A:
PF138951=Ig_2=PD(2.0=9.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGGCGAGGAGGGGAC
R:
GTGGAAGAAAGTTTGGGAGACGT
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]