MmuEX6077128 @ mm10
Exon Skipping
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34600351-34600932:+
Coord C1 exon
chr17:34600351-34600377
Coord A exon
chr17:34600495-34600621
Coord C2 exon
chr17:34600707-34600932
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTATGTCCCTACAGGCT
3' ss Score
10.84
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAACCGGCGATGAGGGGCCAGCTGAAG
Seq A exon
GCTCTGTGGGTGAGTCTGGGCTGGGTACGCTAGCCCTGGCCTTGGGGATCCTGGGAGGCCTGGGAGTAGTAGCCCTGCTCGTCGGGGCTATCCTGTGGCGAAAACGACAACCCAGGCGTGAGGAGAG
Seq C2 exon
GAAGGCCCCGGAAAGCCAGGAGGATGAGGAGGAACGTGCAGAGCTGAATCAGTCAGAGGAAGCGGAGATGCCAGAGAATGGTGCCGGGGGACCGTAAGAGCACCCAGATCGAGCCTGTGTGATGGCCCTAGAGCAGCTCCCCCACATTCCATCCCAATTCCTCCTTGAGGCACTTCCTTCTCCAACCAGAGCCCACATGATCCATGCTGAGTAAACATTTGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452-'10-13,'10-12,13-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.248 C2=1.000
Domain overlap (PFAM):
C1:
PF0240410=SCF=FE(9.8=100)
A:
PF0240410=SCF=FE(45.7=100)
C2:
PF0240410=SCF=PD(27.2=75.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGGGCCAGCTGAAG
R:
CGTGTCAAATGTTTACTCAGCATGG
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types