MmuEX6077128 @ mm9
Exon Skipping
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34737296-34737877:+
Coord C1 exon
chr17:34737296-34737322
Coord A exon
chr17:34737440-34737566
Coord C2 exon
chr17:34737652-34737877
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTATGTCCCTACAGGCT
3' ss Score
10.84
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAACCGGCGATGAGGGGCCAGCTGAAG
Seq A exon
GCTCTGTGGGTGAGTCTGGGCTGGGTACGCTAGCCCTGGCCTTGGGGATCCTGGGAGGCCTGGGAGTAGTAGCCCTGCTCGTCGGGGCTATCCTGTGGCGAAAACGACAACCCAGGCGTGAGGAGAG
Seq C2 exon
GAAGGCCCCGGAAAGCCAGGAGGATGAGGAGGAACGTGCAGAGCTGAATCAGTCAGAGGAAGCGGAGATGCCAGAGAATGGTGCCGGGGGACCGTAAGAGCACCCAGATCGAGCCTGTGTGATGGCCCTAGAGCAGCTCCCCCACATTCCATCCCAATTCCTCCTTGAGGCACTTCCTTCTCCAACCAGAGCCCACATGATCCATGCTGAGTAAACATTTGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452-'11-10,'11-9,14-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=0.264 C2=1.000
Domain overlap (PFAM):
C1:
PF066977=DUF1191=FE(8.0=100),PF0240410=SCF=FE(9.8=100)
A:
PF066977=DUF1191=FE(37.5=100),PF0240410=SCF=FE(45.7=100)
C2:
PF066977=DUF1191=PD(25.0=84.8),PF0240410=SCF=PD(27.2=75.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGGGCCAGCTGAAG
R:
CGTGTCAAATGTTTACTCAGCATGG
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: