RnoEX6061554 @ rn6
Exon Skipping
Gene
ENSRNOG00000000439 | Ager
Description
advanced glycosylation end product-specific receptor [Source:RGD Symbol;Acc:69258]
Coordinates
chr20:4365468-4366079:+
Coord C1 exon
chr20:4365468-4365494
Coord A exon
chr20:4365612-4365738
Coord C2 exon
chr20:4365825-4366079
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTATGTCCTTCCAGGCT
3' ss Score
10.02
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAACCGGTGATGAAGGACAAGCTGCAG
Seq A exon
GCTCTGTGGATGGGTCTGGGCTGGGAACGCTAGCCCTGGCCTTAGGGATCCTGGGAGGCCTGGGAATAGCCGCTCTGCTCATTGGGGCCATCCTGTGGCGAAAACGACAACCCAGACTCGAGGAGAG
Seq C2 exon
GAAGGCCCCAGAAAGCCAGGAGGACGAGGAGGAACGTGCAGAGCTGAATCAGTCAGAGGAAGCGGAAATGCCAGAGAATGGTGCAGGGGGACCTTAAGAGCGCCCAGGCAAACCCTGTCTCCTTCAGCTTCCGACCTCAGCTGTGCTGGCTCCAGACGAGCTCCCCCACTCTACGATCCCAATTCAACCTCGAGCCACTTTCTTCTCCAACCAGAGCCCACATGATCCATGCTGAGTAAACACCTGACACATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000439-'15-19,'15-18,17-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.221 C2=1.000
Domain overlap (PFAM):
C1:
PF0240410=SCF=FE(10.1=100)
A:
PF0240410=SCF=FE(47.2=100)
C2:
PF0240410=SCF=PD(28.1=75.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATGAAGGACAAGCTGCA
R:
GATCATGTGGGCTCTGGTTGG
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]