HsaEX0003069 @ hg19
Exon Skipping
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end product-specific receptor [Source:HGNC Symbol;Acc:320]
Coordinates
chr6:32148745-32149409:-
Coord C1 exon
chr6:32149383-32149409
Coord A exon
chr6:32149128-32149254
Coord C2 exon
chr6:32148745-32149016
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTGTCTCCGTACAGGCT
3' ss Score
10.62
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AACCAGGCGAGGAGGGGCCAACTGCAG
Seq A exon
GCTCTGTGGGAGGATCAGGGCTGGGAACTCTAGCCCTGGCCCTGGGGATCCTGGGAGGCCTGGGGACAGCCGCCCTGCTCATTGGGGTCATCTTGTGGCAAAGGCGGCAACGCCGAGGAGAGGAGAG
Seq C2 exon
GAAGGCCCCAGAAAACCAGGAGGAAGAGGAGGAGCGTGCAGAACTGAATCAGTCGGAGGAACCTGAGGCAGGCGAGAGTAGTACTGGAGGGCCTTGAGGGGCCCACAGACAGATCCCATCCATCAGCTCCCTTTTCTTTTTCCCTTGAACTGTTCTGGCCTCAGACCAACTCTCTCCTGTATAATCTCTCTCCTGTATAACCCCACCTTGCCAAGCTTTCTTCTACAACCAGAGCCCCCCACAATGATGATTAAACACCTGACACATCTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.978 A=0.424 C2=1.000
Domain overlap (PFAM):
C1:
PF066977=DUF1191=FE(8.1=100)
A:
PF066977=DUF1191=FE(40.8=100)
C2:
PF066977=DUF1191=PD(25.2=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGGCCAACTGCAG
R:
GGGGGCTCTGGTTGTAGAAGA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)