BtaEX6098340 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27290258-27291344:+
Coord C1 exon
chr23:27290258-27290336
Coord A exon
chr23:27290479-27290654
Coord C2 exon
chr23:27290979-27291344
Length
176 bp
Sequences
Splice sites
3' ss Seq
GAGTGATGCTCCCCCCTCAGGAT
3' ss Score
6.38
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GTATGTCGGAGAACTGATCTCTGATGCCGAGGCTGATGTGAGAGAGGACGATTCTTATCTCTTCGACTTGGACAACAAG
Seq A exon
GATGGAGAGGTGTACTGCATCGATGCCCGTTACTACGGCAACATCAGCCGCTTCATCAACCACTTGTGTGACCCCAACATCATCCCCGTCCGAGTCTTCATGCTGCACCAAGACCTGAGATTTCCACGCATCGCCTTCTTCAGTTCCCGAGACATCCGGGCCGGGGAGGAGCTGGG
Seq C2 exon
GTTTGACTATGGTGACCGCTTCTGGGACATCAAAAGCAAGTACTTCACCTGCCAGTGTGGCTCTGAGAAGTGCAAGCACTCGGCTGAGGCCATTGCCCTGGAGCAGAGCCGCCTGGCCCGCCTGGACCCACACCCTGAGCTGCTGCCTGAGCTCAGCTCCCTGCCCCCCGTCAACCCCTGAGATCGGACCACAGCCACTGTTCCACCCCTGGACAGCCACCAGCTCAGTAGCCACTTCTGCCGCTTGCCCACAGCCTACGCCTGGGGGCTTTTACCGTTTCCTCTCTCCCTTACTTACCCCTTCACACATTCCTCAGCCAGCTCCCAGCCAGGCCCTGGAGGTCTGACAGCCCCTGTCTCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676-'31-36,'31-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCTGATGTGAGAGAGGA
R:
GGTCCGATCTCAGGGGTTGA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]