GgaEX6014847 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2484168-2488975:+
Coord C1 exon
chr17:2484168-2484246
Coord A exon
chr17:2487112-2487287
Coord C2 exon
chr17:2488458-2488975
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGCAACATTTCTCCCTCTAGGAC
3' ss Score
11.53
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GTATGTTGGCGAGCTGATATCCGACTCCGAAGCAGATGTCCGTGAAGAGGATTCCTACCTCTTCGACCTTGACAACAAG
Seq A exon
GACGGAGAGGTGTACTGCATAGATGCCCGTTTCTATGGCAACATCAGCCGCTTTATAAACCACCTCTGTGAGCCAAACCTCATTCCGGTGCGAGTCTTCATGTCTCACCAGGACCTCCGCTTCCCCAGGATCGCCTTCTTCAGCACGAGGCACATAGAGGCCGGAGAAGAAATCGG
Seq C2 exon
CTTCGACTACGGTGACAGGTTCTGGGACATAAAAGGCAAGTTCTTCAGCTGTCAGTGCGGTTCACCCAAGTGCAAACACTCGAGCTCAGCGCTGGCCCAGAGGCAGGCGAGCACCTCGTCCCAGGACACGCAGGAAAACGGGCTCCCCGACACCAGCTCTGCCACAGCAGCCGGCCCCTTTTGAGGCTCCGCTCCCCAGAGACTGACTCGTTTTAACCCTATAGATTCACTTACTGTCTGAATTTTCCATTTAAAGAGAGGAAACCCGCTCAAGGAAAGCCAGGGGTTCGTGACACTTAGGGCTGTGCCACCGACTGTTACTTGAGGAATAAGTGAAAGCAAATCCCACCTCTGTGGTGTTGTTCTCCCCTCCTGGTCCTGGAAGGCTGCTGGTTCTTACCGTGCCGAGGGGTGGCTGTTGCATTTTTTTTTCCATGCGAACTGTCCTGGCCTCCGTCTCTTAATGTTCAAAGTGTTGTCAGAGCCCAGGGAGAGCCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'48-42,'48-41,49-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.377
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATGTCCGTGAAGAGGA
R:
GAGTCAGTCTCTGGGGAGCG
Band lengths:
258-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]