HsaEX6064340 @ hg38
Exon Skipping
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137818060-137870016:+
Coord C1 exon
chr9:137818060-137818138
Coord A exon
chr9:137834349-137834524
Coord C2 exon
chr9:137864679-137870016
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCCGGCTTCTCGCCCTGCAGGAC
3' ss Score
9.97
5' ss Seq
CGGGTACGC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GTATGTTGGGGAGCTGATTTCAGACTCAGAAGCCGACGTTCGAGAGGAAGATTCTTACCTCTTTGATCTCGACAATAAG
Seq A exon
GACGGGGAGGTTTACTGCATCGACGCGCGGTTCTACGGGAACGTCAGCCGGTTCATCAACCACCACTGCGAGCCCAACCTGGTGCCCGTGCGCGTGTTCATGGCCCACCAGGACCTGCGGTTCCCCCGGATCGCCTTCTTCAGCACCCGCCTGATCGAGGCCGGCGAGCAGCTCGG
Seq C2 exon
GGGAAAACGTCCAGAAACAAATGAATCCTCAGGTCTGGAACTCAGGAGAAGACTCTGGACTGAGCTATGGATCTGGAAACTCCTGAACAGAGCAGTGGTTCCAAGCTGGAGACGATTTTGCACCTGGGGGACGTCTGCAAGGTCTGGAGACAGTTTGGGTTGTCACAACCGAAGGAGTGCTATGGCACTTAGTGGGATCAGGCAGGGATGTTGTTAAACACTGTACAGTGCACAGGACAGCCCTCCCCAACAGAGTTCCTGGACCGTACATGTTAATGGTGCTGGGGCTGAGAGGCCACTGATGGACTCGTGGAGCTGGCGAGGCGGCCCTGGAGTCTGTGGCCTGTGAGGGAAGCGGGAACCTCTGAGGGAGTGCAGCGTTCAGCAGCATCCACCCATCCAGCCACGAGGCCTGGCAGAGGGGTGGGAGAGGAGGTGGACCTGCCGTAGACCCCACAAGCCTGTCAAGGAGCTGGGACTTGGAGTGAAAAGGAGAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090_MULTIEX1-37/38=36-C2
Average complexity
C2
Mappability confidence:
98%=98=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTCAGAAGCCGACGTTC
R:
GCCATAGCACTCCTTCGGTTG
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains