MmuEX6099379 @ mm9
Exon Skipping
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24646289-24657105:-
Coord C1 exon
chr2:24657027-24657105
Coord A exon
chr2:24647801-24647976
Coord C2 exon
chr2:24646289-24647650
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTTTACCCCAAAGGAT
3' ss Score
8.24
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
ATACGTAGGGGAGCTGATTTCGGACTCTGAAGCTGATGTTCGGGAAGAGGACTCTTACCTCTTTGATCTTGACAATAAG
Seq A exon
GATGGAGAGGTATACTGCATTGACGCTCGGTTCTATGGGAATGTCAGCCGGTTCATAAACCACCACTGCGAACCCAACCTTGTGCCTGTGCGAGTGTTCATGTCACACCAGGACCTGCGGTTTCCCAGGATTGCCTTCTTCAGTACCCGCCTGATTCAGGCTGGGGAGCAGCTCGG
Seq C2 exon
GTTCGACTACGGGGAGCGCTTTTGGGACGTCAAGGGCAAGCTCTTCAGTTGCCGGTGTGGGTCTTCCAAGTGTCGGCACTCAAGCGCAGCCCTGGCCCAGAGGCAAGCCAGTGCAGCCCAGGAGCCTCAGGAGAATGGCCTTCCAGATACCAGCTCTGCAGCCGCTGCTGACCCCCTATGAATTGCCAGTGTGGCCAGTGGGACCCTCAAAATCAGATTCTGGTGACTGCAATTTAGAGAGGAAGAAACTCTACATATGTCCAAGAGGAGCTGGAGGTATGGACACCTCTCAGGAATGTTCTGGGCCCGAGGTGTTCATTTAGCTGGCCCAGTGCTCAGGCCAGAGCATGCCTCTGGGCCTGCACCTCAGAGACCTGGGACTCCATGTTGCATAACTTGTGAGTTACTGGTGGTGACTCCGTGCTGCAGCACTTTCCACGTCTCCCTCTGGTCTCCGAAGCCCTTGCTCCACTGCCAGTTTTGTTTGTATAATGTCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-'43-39,'43-38,45-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.374
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTGATTTCGGACTCTG
R:
GGCAATTCATAGGGGGTCAGC
Band lengths:
258-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: