HsaEX6064340 @ hg19
Exon Skipping
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone-lysine N-methyltransferase 1 [Source:HGNC Symbol;Acc:24650]
Coordinates
chr9:140712512-140730576:+
Coord C1 exon
chr9:140712512-140712590
Coord A exon
chr9:140728801-140728976
Coord C2 exon
chr9:140729225-140730576
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCCGGCTTCTCGCCCTGCAGGAC
3' ss Score
9.97
5' ss Seq
CGGGTACGC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GTATGTTGGGGAGCTGATTTCAGACTCAGAAGCCGACGTTCGAGAGGAAGATTCTTACCTCTTTGATCTCGACAATAAG
Seq A exon
GACGGGGAGGTTTACTGCATCGACGCGCGGTTCTACGGGAACGTCAGCCGGTTCATCAACCACCACTGCGAGCCCAACCTGGTGCCCGTGCGCGTGTTCATGGCCCACCAGGACCTGCGGTTCCCCCGGATCGCCTTCTTCAGCACCCGCCTGATCGAGGCCGGCGAGCAGCTCGG
Seq C2 exon
GTTTGACTATGGAGAGCGCTTCTGGGACATCAAAGGCAAGCTCTTCAGCTGCCGCTGCGGCTCCCCCAAGTGCCGGCACTCGAGCGCGGCCCTGGCCCAGCGTCAGGCCAGCGCGGCCCAGGAGGCCCAGGAGGACGGCTTGCCCGACACCAGCTCCGCGGCTGCCGCCGACCCCCTATGAGACGCCGCCGGCCAGCGGGGCGCTCGGGAGCCAGGGACCGCCGCGTCGCCGATTAGAGGACGAGGAGGAGAGATTCCGCACGCAACCGAAAGGGTCCTTCGGGGCTGCGCCGCCGGCTTCCTGGAGGGGTCGGAGGTGAGGCTGCAGCCCCTGCGGGCGGGTGTGGATGCCTCCCAGCCACCTTCCCAGACCTGCGGCCTCACCGCGGGCCCAGTGCCCAGGCTGGAGCGCACACTTTGGTCCGCGCGCCAGAGACGCTGGGAGTCCGCACTGGCATCACCTTCTGAGTTTCTGATGCTGATTTGTCGTTGCGAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090-'58-63,'58-62,62-63=AN
Average complexity
A_S
Mappability confidence:
90%=86=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.317
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTCAGAAGCCGACGTTC
R:
GTCTCATAGGGGGTCGGCG
Band lengths:
243-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)