BtaEX6047461 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105429172-105433551:-
Coord C1 exon
chr11:105433473-105433551
Coord A exon
chr11:105429971-105430146
Coord C2 exon
chr11:105429172-105429896
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCGTCGCGTCTCTCCCCCAGGAC
3' ss Score
9.78
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTACGTTGGGGAGCTTATTTCTGACTCGGAAGCTGATGTGCGGGAAGAAGACTCTTATCTCTTTGATCTTGACAACAAG
Seq A exon
GACGGAGAGCTGTACTGCATCGACGCGCGTTTCTATGGCAACGTCAGCCGCTTCATCAACCACCACTGTGAGCCCAATCTGGTGCCCGTGCGTGTGTTCATGTCCCACCAGGACCTGCGCTTCCCGCGGATCGCCTTCTTCAGCACCCGCCTGATTGAGGCCGGGGAGCAGCTGGG
Seq C2 exon
CTTCGACTATGGGCAGCGCTTCTGGGACATCAAGGGCAAGCTGTTCAGCTGCCGCTGCGGCTCCCCCAAGTGCCGGCACTCCGGGGCCGCGCTGGCCCAGCGGCAGGCCGGTGCCCAGGAGGACGGGCTGCCCGACACCAGCTCCTCGCCTGCCGACCCGCTATGAGAGCGCCGCCCGGCGCCCAAGTGGACGCCGTTCGCTGTGGTTTGGGGAGGACGCGGAGGCGTGCAGGAGACCGGCTGGCCTGCCCAGGGCCGCGGGGGCAGGGCCCGGCTGCGCGGGGACGCCTGGGCTCCTTGCCGGCCTCGCTGTGAGTTCCCGACGGAGGTCTTTCTGCTCCACGTTTCTCGTCTCCCCTCGCGTGTCGTCGCTCCCGGCTCACCGCCGGGCTGGGGGCTGCGTCCTGTCGGCCCGGACTCTCCGTGTGGCCCGCCGCGGCCCGCATGGCCGGTGCTGGCTCTGGGCGGCACAGACCCCGTGCCCACCGCCCCTGCGAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148-'39-37,'39-35,41-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.382
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGATGTGCGGGAAGAAG
R:
GAACGGCGTCCACTTGGG
Band lengths:
249-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]