DreEX6083723 @ danRer10
Exon Skipping
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14547518-14553763:-
Coord C1 exon
chr21:14553685-14553763
Coord A exon
chr21:14551011-14551186
Coord C2 exon
chr21:14547518-14549186
Length
176 bp
Sequences
Splice sites
3' ss Seq
CAATTTATTTTCTGTCGCAGGTG
3' ss Score
9.71
5' ss Seq
TGGGTCTGA
5' ss Score
-2.19
Exon sequences
Seq C1 exon
ATACGTGGGTGAGATCATCTCTGACGCCGAAGCAGATGTCAGAGAGAATGACTCCTATCTTTTCAGTCTGGACAGCAAG
Seq A exon
GTGGGTGACATGTACTGCGTTGATGCTCGTTTCTACGGGAACATCAGCCGGTTCATAAACCATCACTGTGAGCCCAATCTGCTCCCCTGTCGGGTGTTCACCTCTCACCAGGACCTCCGATTTCCTCACATCGCATTCTTCGCCTGCAAGAACATCAGTGCCGGAGATGAACTTGG
Seq C2 exon
GTTTGACTATGGCGATCACTTCTGGGACGTAAAGGGGAAGCTGTTCAACTGCAAGTGTGGCTCATCCAAATGCAAGCACTCTGCAGCTGCCATCGCCCAGACACAGGCAGACAGTACACCAGGTGACCAGCAGCCCAGCGCCCTACCCGATACCAGCTCATCCACCCCATCCAGCCCCAGCTAAGCCTTCTCACAACCATGTTTGTCACCTTTGCCAGCCTGCACCTCCCTTCACCAGCACGGGCACATCTCTGCCATCTCTGGGTAGCCACTTGATGCTACACCCACAGTGCCACATTTCGCTCTGGTGGTCCGAAAGCCTATTGTTTGGTATGGTTTAGGGGTTTCAAATCTTGAAGGTGAGAGGTGCACGATTGGACTGGTGTTTGGAGTGTTCTGAATGCACATTTTGTATGGATTTTTTTGTTTTTTATTGTCAGCCTGCCCATTTTGGACCACGATGCATCTTGTAAAGAGGATTTTTGTTTTTTTCTTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-'44-38,'44-36,45-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.426
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGATCATCTCTGACGCCG
R:
GATGGGGTGGATGAGCTGGTA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]