DreEX6011321 @ danRer10
Exon Skipping
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28890031-28892238:-
Coord C1 exon
chr5:28892160-28892238
Coord A exon
chr5:28891827-28892002
Coord C2 exon
chr5:28890031-28891692
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATGGCGACCTTTTTTTGTAGGTT
3' ss Score
7.91
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTGCTGGTGAAATAATTTCCGATGGAGAAGCTAACATTCGGGAAAACGACTCCTACATGTTCAACCTAGACAATAAG
Seq A exon
GTTGGAGAGGCCTACTGCATTGATGGACAATTTTATGGTAATGTTAGCAGGTTTATGAATCATCTTTGTGAGCCCAATCTATTCCCAGTACGAGTGTTCACCAAACATCAAGACATGCGCTTTCCTCGTATTGCATTCTTTGCAAGCAAGCATATTCAAGCTGGAGATGAGCTTGG
Seq C2 exon
GTTTGACTATGGGGATCATTACTGGCAAATCAAGAAAAAGTACTTCCGCTGCCAATGTGGCTCTGGAAAATGTAGGTACTCTGAGGTCGTTCCGGACCGGAACCATGCAGAAAGCTCAGCCCAAACCCTCAGTAATCAGACTGTTGCTCAGGTGGAACACATTCAGTCTTCTAACACTGCTATAGCAATAACTCAACCCTGAGCCTTTCACGCATATAACAGGATACGCTGAGGCCTTTAACAAGTAAATATTGTCAGGAGTTCAACGCATCATTTGCTGAATCTCAGCTGCAAGGGAGAACAATTTGTGCAGAGGAACAGCATCATTTTTTATTTGGTCACTGCCGTTGAGGACATTTTTTTTAGAAATACGGTACTTTTAGTCAAAGGAATATTTGGCCTTTTGTATCAATGCATGTCTCACATGGTGTATTTTAAGATGATGAAGAGGTTCTGTAAATGTATCACATTAGCATAATAGGTGTTTTTACAATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-'32-32,'32-30,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=5.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAAACGACTCCTACATGT
R:
ATATGCGTGAAAGGCTCAGGG
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]