RnoEX6061622 @ rn6
Exon Skipping
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4591560-4592980:+
Coord C1 exon
chr20:4591560-4591638
Coord A exon
chr20:4591807-4591982
Coord C2 exon
chr20:4592569-4592980
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGCCCCACTCCCCAGGAT
3' ss Score
9.47
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GTACGTCGGGGAGCTGATCTCCGACGCCGAGGCAGACGTGAGAGAGGATGATTCTTACCTCTTCGACTTAGACAACAAG
Seq A exon
GATGGTGAGGTCTACTGCATTGATGCCCGTTACTATGGCAACATCAGCCGCTTCATTAACCACCTGTGCGACCCCAACATCATCCCTGTTCGGGTCTTCATGCTGCATCAAGACCTACGGTTCCCTCGCATCGCCTTCTTCAGCTCCAGGGACATCCGGACCGGGGAGGAGCTGGG
Seq C2 exon
GTTTGACTACGGCGACCGGTTCTGGGATATCAAGAGCAAGTATTTCACCTGCCAGTGTGGCTCTGAGAAGTGCAAGCATTCAGCTGAGGCCATCGCCCTGGAGCAGAGCCGCCTGGCCCGTCTGGACCCCCACCCGGAGCTGCTCCCTGACCTCAGCTCCCTGCCCCCCATCAACACCTGAGGACTGTTAAAATCCAGGCCGGGGCACTGCCCCTCAGACATTCCCCCATCGGAGGACCCCAGTAAGGCCTGGAAGGTTTACAGCCCCTCTCCCAGAGCTGGTTTCTCACTGGGAGTGAGTGACTTCAGGGCTGGCCTACCCCACTGAGCCTGGCCTCAGTTCGCTCATTGAAGTTGGGCCTCTGCCAACTGATTTTCTGTGCTCTCAATAAATGTTGGGTTTGGTAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630-'41-50,'41-47,42-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.012
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGACGTGAGAGAGGAT
R:
CCCCGGCCTGGATTTTAACAG
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]