MmuEX1009305 @ mm10
Exon Skipping
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:34912389-34914051:+
Coord C1 exon
chr17:34912389-34912467
Coord A exon
chr17:34912634-34912809
Coord C2 exon
chr17:34913640-34914051
Length
176 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTCTCCACCCCCAGGAT
3' ss Score
10.16
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GTATGTAGGAGAGCTGATCTCTGATGCCGAGGCTGATGTGAGAGAGGATGATTCTTACCTCTTCGATTTAGATAACAAG
Seq A exon
GATGGCGAGGTTTACTGCATTGATGCCCGTTACTATGGCAACATCAGCCGATTCATTAACCACCTGTGTGACCCCAACATCATCCCTGTCCGGGTTTTCATGCTGCACCAAGATCTACGGTTCCCACGCATTGCCTTCTTCAGCTCCAGGGACATCCGGACTGGGGAGGAGCTGGG
Seq C2 exon
CTTTGACTACGGTGACCGATTCTGGGACATCAAGAGCAAGTATTTCACCTGCCAGTGTGGCTCTGAGAAGTGCAAGCATTCAGCGGAGGCCATCGCCCTGGAGCAGAGCCGCCTGGCCCGGCTGGACCCCCACCCGGAGCTGCTCCCTGACCTCAGCTCCCTGCCCCCCATCAACACCTGAGGACTCTTAAAATCCAGGCCGGGCACTGCCCTTCAGACATTTCTCCATCAGAGACCCCAGTAAGGCCTGGAAGGTCGATGGCCCCTCTCCCAGAGCTGGTTTCTCACTGGGAGTGCAAGTGACTTCAGGGCTGGCCTTCCCCACTGAGCCTGGCCTCAGTTAGCTGATTGAAGTTGGGCCTCTGCCAGCTGATTTTCTGTGTTCTCAATAAATGTTGGGTTTGGTAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787-'62-63,'62-62,63-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCTGATGTGAGAGAGGA
R:
GCCCGGCCTGGATTTTAAGAG
Band lengths:
257-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types