DreEX0003869 @ danRer10
Exon Skipping
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1334979-1337327:-
Coord C1 exon
chr19:1337249-1337327
Coord A exon
chr19:1336448-1336623
Coord C2 exon
chr19:1334979-1335153
Length
176 bp
Sequences
Splice sites
3' ss Seq
GAATATTTCTATTGGATCAGGAC
3' ss Score
4.28
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GTATGTTGGTGAGCTGATATCTGATGCTGAAGCAGACGTGAGAGAGGACGATTCATATCTCTTTGACCTGGACAACAAG
Seq A exon
GACGGTGAGGTGTACTGTATCGATGCCCGCTATTACGGAAACATCAGCCGCTTCATAAACCATCTGTGTGACCCGAACATCATCCCTGTGCGTGTGTTTATGCTGCATCAGGACCTGCGCTTCCCTCGCATCGCTTTCTTCAGCTCCAGAGACATCTTCACCGGACAGGAGCTCGG
Seq C2 exon
GTTTGATTACGGTGATCGTTTCTGGGACATCAAGAGCAAGTACTTCACCTGTCAGTGCGGCTCGGAGAAATGCAAACACTCTGCGGAGGCCATCGCTCTAGAGCAGAGCCGGCTCGCACGTCTGGAGGTGTGTGTAGAGCCCGACACTGCACTCTCACTCATCGGGCACTCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325-'33-43,'33-41,34-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
PF0085623=SET=FE(54.2=100)
C2:
PF0085623=SET=PD(3.7=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGCTGATATCTGATGCTG
R:
ATGAGTGCCCGATGAGTGAGA
Band lengths:
246-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]