BtaEX6099241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47678743-47680203:-
Coord C1 exon
chr23:47680120-47680203
Coord A exon
chr23:47679439-47679546
Coord C2 exon
chr23:47678743-47678841
Length
108 bp
Sequences
Splice sites
3' ss Seq
GAAACGTCGTTATTCTGCAGGAT
3' ss Score
6.67
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
AACTTGCACAGTGAGATAAGTGGCAAACGAGACAAATCAGAAGAAGTACAAAAAATTGCTGAACTTTGTGCAAATTCAATTAAG
Seq A exon
GATTATGAACTGCAGCTGGCATCATACACCTCAGGACTGGAAACTCTGCTGAGTATCCCTATCAAGAGAACTGTGATTCAGTCTCCTTCTGGGGTGATTCTGCAAGAG
Seq C2 exon
GCTGCAGATATGCATGCTCGGTACATAGAGCTTCTTACAAGGTCTGGAGACTATTACAGATTCTTAAGTGAGATGCTGAAGAGTTTGGAAGATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'24-21,'24-19,25-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACAGTGAGATAAGTGGCA
R:
TCAGATCTTCCAAACTCTTCAGCA
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]